A Geographic Variant of the Staphylococcus aureus Panton‐Valentine Leukocidin Toxin and the Origin of Community‐Associated Methicillin‐Resistant S. aureus USA300
1Evolutionary and Structural Bioinformatics, 2Infectious Diseases Medicine Development Center, and 3Department of Microbiology, GlaxoSmithKline, Collegeville, Pennsylvania; 4Evolutionary and Structural Bioinformatics, GlaxoSmithKline, Research Triangle Park, North Carolina
Background.
The majority of recent community‐associated methicillin‐resistant Staphylococcus aureus (MRSA) infections in the United States have been caused by a single clone, USA300. USA300 secretes Panton‐Valentine leukocidin (PVL) toxin, which is associated with highly virulent infections.
Methods.
We sequenced the PVL genes of 174 S. aureus isolates from a global clinical sample. We combined phylogenetic reconstruction and protein modeling methods to analyze genetic variation in PVL.
Results.
Nucleotide variation was detected at 12 of 1726 sites. Two PVL sequence variants, the R variant and the H variant, were identified on the basis of a substitution at nt 527. Of sequences obtained in the United States, 96.7% harbor the R variant, whereas 95.6% of sequences obtained outside the United States harbor the H variant; 91.3% of MRSA isolates harbor the R variant, and 91.3% of methicillin‐susceptible strains harbor the H variant. A molecular model of PVL shows 3 mechanisms by which the amino acid substitution may affect PVL function.
Conclusions.
All sampled PVL genes appear to share a recent common ancestor and spread via a combination of clonal expansion and horizontal transfer. US isolates harbor a variant of PVL that is strongly associated with MRSA infections. Protein modeling reveals that this variant may have functional significance. We propose a hypothesis for the origin of USA300.
Received 25 January 2007; accepted 22 May 2007; electronically published 4 January 2008.
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(See the editorial commentary by John and Lindsay, on pages 175–8.)
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Online publication date: 1-Jul-2009.
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Online publication date: 1-Jul-2009.
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Online publication date: 1-Sep-2008.
Online publication date: 15-Jan-2008.
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Potential conflicts of interest: none reported.
Financial support: GlaxoSmithKline.





